Developing a Reagent Application Ontology within the OBO Foundry Framework

نویسندگان

  • Matthew H. Brush
  • Nicole Vasilevsky
  • Carlo Torniai
  • Tenille Johnson
  • Chris Shaffer
  • Melissa Haendel
چکیده

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Applying Rigidity to Standardizing OBO Foundry Candidate Ontologies

The Open Biomedical Ontology (OBO) Foundry initiative is a collaborative effort for developing interoperable, science-based ontologies. OBO uses the Basic Formal Ontology (BFO) as its upper ontology. Ontologies developed for OBO use include some that have been ratified, and others holding the status of candidate. There are no formal, principled criteria that a candidate ontology must meet for r...

متن کامل

A Specimen-based View of the World Using the Biological Collections Ontology to Model Biodiversity Collections

Application ontologies for biodiversity and biomedical specimen data are being developed within the OBO Foundry framework. Both the Biological Collections Ontology (BCO) and the Ontologized Minimum Information About BIobank data Sharing (OMIABIS) are ontologies rooted in specimens and the need to track, share and query data about specimens. In this paper, we briefly describe the structure of th...

متن کامل

بررسی هستان شناسی های توسعه یافته مبتنی بر اصول هستان شناسی های منبع باز زیست پزشکی

Background and Aim: Ontologies facilitate data integration, exchange, searching and querying. Open Biomedical Ontologies (OBO) Foundry is a solution for creating reference ontologies. In this foundry, the design of ontologies is based on established principles which allow for their interactions as a single system. The purpose of this study is to determine the main features of ontologies develop...

متن کامل

Developing an Ontology from the Application Up

The biomedical ontology community is producing ontologies which represent biological knowledge and with a bias towards a realist perspective due to the use of the upper level ontology BFO [1]. While these ontologies are useful representations of the knowledge space they are not always applicable in the context of typical biomedical use cases. In this paper we describe our use of reference ontol...

متن کامل

The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability

BACKGROUND The Cell Ontology (CL) is an OBO Foundry candidate ontology covering the domain of canonical, natural biological cell types. Since its inception in 2005, the CL has undergone multiple rounds of revision and expansion, most notably in its representation of hematopoietic cells. For in vivo cells, the CL focuses on vertebrates but provides general classes that can be used for other meta...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2011